-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               20.1
- User:                                                              lsand039
- Dataset:                                  20-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   20.txt
- Observation count:                                                      377
- Number of variables:                                                     21
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      20.1static.report.2016.09.01.15.36.18.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            1.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472758578505
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 467.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   81720750
         Time       10.0 m (16.6% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   148174250
         Time       20.0 m (33.3% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   205388250
         Time       30.0 m (50.0% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   262538250
         Time       40.0 m (66.6% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   319981250
         Time       50.0 m (83.3% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   386723750
         Time       1.0 h (100.0% of max. 1.0 h)
         Re-anneals  2 (0.0% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -3304.8482, first found at iteration 2320686
21
 0 3 1 9 16
 1 2 4 12
 2 2 0 13
 3 2 4 13
 4 2 13 16
 5 2 0 13
 6 2 12 13
 7 2 12 20
 8 2 0 13
 9 2 12 14
10 2 9 14
11 2 13 17
12 2 13 17
13 1 17
14 2 6 7
15 2 4 13
16 2 11 13
17 0
18 2 4 11
19 2 3 13
20 2 3 13


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 386723750
  Total time used: 1.0 h
  High score: -3304.8482, first found at iteration 2320686
  Number of re-anneals: 2

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    128918301
  Deletions -- proposed:    128888808
  Reversals -- proposed:    128916640

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  128918301,  acyclic:  77667553
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  128916640,  acyclic:  74146483

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          107625123
  Scores (cache)            placed         fetched        
      with 0 parents:       21             6457443        
      with 1 parents:       420            183736984      
      with 2 parents:       8002257        13629603       
      with 3 parents:       92100156       36554180       
      with 4 parents:       7522112        6846453        
      with 5 parents:       157            3              

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  77667553,  better score:  5516,  other accepted:  2542
  Deletions -- considered:  128888808,  better score:  2513,  other accepted:  5505
  Reversals -- considered:  74146483,  better score:  6440912,  other accepted:  15678
  Average permissivity:     0.0

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -3304.8482, found by thread 1
21
 0 3 1 9 16
 1 2 4 12
 2 2 0 13
 3 2 4 13
 4 2 13 16
 5 2 0 13
 6 2 12 13
 7 2 12 20
 8 2 0 13
 9 2 12 14
10 2 9 14
11 2 13 17
12 2 13 17
13 1 17
14 2 6 7
15 2 4 13
16 2 11 13
17 0
18 2 4 11
19 2 3 13
20 2 3 13

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (16,0) ->   (0,0)   .1108
Influence score for   (9,0) ->   (0,0)   .1861
Influence score for   (1,0) ->   (0,0)   -.4339
Influence score for  (12,0) ->   (1,0)   -.3331
Influence score for   (4,0) ->   (1,0)   .2881
Influence score for  (13,0) ->   (2,0)   .4639
Influence score for   (0,0) ->   (2,0)   .4469
Influence score for  (13,0) ->   (3,0)   .2082
Influence score for   (4,0) ->   (3,0)   -.1893
Influence score for  (16,0) ->   (4,0)   .0000
Influence score for  (13,0) ->   (4,0)   -.3270
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for   (0,0) ->   (5,0)   .4245
Influence score for  (13,0) ->   (6,0)   .3307
Influence score for  (12,0) ->   (6,0)   .3307
Influence score for  (20,0) ->   (7,0)   .3211
Influence score for  (12,0) ->   (7,0)   .0647
Influence score for  (13,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.0670
Influence score for  (14,0) ->   (9,0)   -.1750
Influence score for  (12,0) ->   (9,0)   .0000
Influence score for  (14,0) ->  (10,0)   .0000
Influence score for   (9,0) ->  (10,0)   .0619
Influence score for  (17,0) ->  (11,0)   .3307
Influence score for  (13,0) ->  (11,0)   .3307
Influence score for  (17,0) ->  (12,0)   .3818
Influence score for  (13,0) ->  (12,0)   .3307
Influence score for  (17,0) ->  (13,0)   .6572
Influence score for   (7,0) ->  (14,0)   .1664
Influence score for   (6,0) ->  (14,0)   .2200
Influence score for  (13,0) ->  (15,0)   .1972
Influence score for   (4,0) ->  (15,0)   -.1325
Influence score for  (13,0) ->  (16,0)   .0000
Influence score for  (11,0) ->  (16,0)   .0742
Influence score for  (11,0) ->  (18,0)   .1583
Influence score for   (4,0) ->  (18,0)   .0000
Influence score for  (13,0) ->  (19,0)   .3307
Influence score for   (3,0) ->  (19,0)   .3307
Influence score for  (13,0) ->  (20,0)   .3307
Influence score for   (3,0) ->  (20,0)   .2937

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -3304.8482\nProject: 20.1\nUser: lsand039\nDataset: 20-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];

    1->0;
    9->0;
    16->0;
    4->1;
    12->1;
    0->2;
    13->2;
    4->3;
    13->3;
    13->4;
    16->4;
    0->5;
    13->5;
    12->6;
    13->6;
    12->7;
    20->7;
    0->8;
    13->8;
    12->9;
    14->9;
    9->10;
    14->10;
    13->11;
    17->11;
    13->12;
    17->12;
    17->13;
    6->14;
    7->14;
    4->15;
    13->15;
    11->16;
    13->16;
    4->18;
    11->18;
    3->19;
    13->19;
    3->20;
    13->20;
}

